Database Inconsistency Warning

I tried to open from the external hard drive and I got the following message:
"Warning
An inconsistency in your database has been detected. The application will now quit, relaunch, and restore your database to a consistent state. This may take some time."
My opitions is to quit, and restore, but Aperture never restores the database. I get the message over and over again.
I tried holding the Command + Option to rebuiled library but it doesn't work..please help.

I've never had the situation you're both describing, but perhaps this will help...
When you hold down option-apple and force the database to rebuild, from my observations it seems to delete the old library file, and recreate the file from all the other spread-around-the-bundle files. It looks to me as though Apple were making sure the data could be accessed fast (via a SQL database file) and also was robust against corruption (lots of XML files).
So, perhaps it's not managing to delete that library file (a permissions problem ?). Try this:
Right-click (ctrl-click) on your library bundle, and select 'show package contents'
Double-click on the 'Aperture.aplib' folder
Drag the 'Library.apdb' file to the trash. If it doesn't go, you'll have to delete it with 'sudo'.
... and then re-launch Aperture. You should get a 'Library alert' dialogue box, at which point click on 'recover now'. It'll take a while if it's a large library...
-=C=-
Mac Pro   Mac OS X (10.4.8)  

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    WD web module webdynpro/resources/sap.com/tcbpemwdui~notes: SapWebDynproRuntimeGen     7.1101.20081107110357.0000 (release=NW711_01_REL, buildtime=2008-11-08T19:34:49+0000, changelist=32183, host=pwdfm245, is-central=true)
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    WD web module webdynpro/resources/sap.com/tcbpemwdui~taskinstance: SapDictionaryGenerationTemplates     7.1101.20081107110357.0000 (release=NW711_01_REL, buildtime=2008-11-08T19:24:49+0000, changelist=31630, host=pwdfm245, is-central=true)
    WD web module webdynpro/resources/sap.com/tcbpemwdui~taskinstance: SapGenerationFrameworkCore     7.1101.20081107110357.0000
    WD web module webdynpro/resources/sap.com/tcbpemwdui~taskinstance: SapIdeWebDynproCheckLayer     7.1101.20081107110357.0000 (release=NW711_01_REL, buildtime=2008-11-08T19:36:35+0000, changelist=32179, host=pwdfm245, is-central=true)
    WD web module webdynpro/resources/sap.com/tcbpemwdui~taskinstance: SapMetamodelCommon     7.1101.20081107110357.0000 (release=NW711_01_REL, buildtime=2008-11-08T19:14:39+0000, changelist=32070, host=pwdfm245, is-central=true)
    WD web module webdynpro/resources/sap.com/tcbpemwdui~taskinstance: SapMetamodelCore     7.1101.20081107110357.0000 (release=NW711_01_REL, buildtime=2008-11-08T19:11:46+0000, changelist=32070, host=pwdfm245, is-central=true)
    WD web module webdynpro/resources/sap.com/tcbpemwdui~taskinstance: SapMetamodelDictionary     7.1101.20081107110357.0000 (release=NW711_01_REL, buildtime=2008-11-08T19:19:49+0000, changelist=31632, host=pwdfm245, is-central=true)
    WD web module webdynpro/resources/sap.com/tcbpemwdui~taskinstance: SapMetamodelWebDynpro     7.1101.20081107110357.0000 (release=NW711_01_REL, buildtime=2008-11-08T19:25:44+0000, changelist=32739, host=pwdfm245, is-central=true)
    WD web module webdynpro/resources/sap.com/tcbpemwdui~taskinstance: SapWebDynproGenerationCore     7.1101.20081107110357.0000 (release=NW711_01_REL, buildtime=2008-11-08T19:36:46+0000, changelist=32179, host=pwdfm245, is-central=true)
    WD web module webdynpro/resources/sap.com/tcbpemwdui~taskinstance: SapWebDynproGenerationTemplates     7.1101.20081107110357.0000 (release=NW711_01_REL, buildtime=2008-11-08T19:37:12+0000, changelist=32179, host=pwdfm245, is-central=true)
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