Deinterlacing Filter (Upper, Lower etc.)

Hello,
recently I came across the famous deinterlacing problem, now I'm just wondering:
I got the black lines away by putting the deinterlacing filter on my slowmotion and my speeded up video clips (changing the speed occurred black stripes after rendering) .
Now which deinterlacing filter should I use, upper or lower, is this even making a difference quality wise and if I put one filter on one single clip, should I directly go and give every clip I have, even the ones that don't have black stripes after rendering, a deinterlacing filter?
After converting my clips from .mts to .mov via Popcorn 4 all the clips I edit on have this "ghost" effect (front picture http://vimeo.com/14850592), any tipps on getting away this problem?
Thanks a lot,
highly appreciate your efforts ,
Philippe

You should only de-interlace clips which have a problem as rendering footage that does not need de-interlacing will take a long time.
Regarding which settings to use, simply get a short "problem" clip, no more than 10 seconds long and do a number of tests to find which works best.

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