Delayed Slow Shutdown Issues

Alright my fellow Mac friends, I call upon your help.
I have a Mac Pro (specs shown below), that is lightning fast. Startup is less than 10 seconds. Shutdown was great too, until a short time ago.
Within the last 3 weeks or so, something has changed where when I choose restart, it goes right away to just showing the desktop picture and little "thinking propeller", but then just sits for 10-20 seconds. Before this, it would restart within 1-2 seconds.
I've tried digging in console to enlighten me, but no luck. Here is a snippet of my most recent restart attempt. Please let me know if you see anything.
Jan 25 16:13:28 godzfire loginwindow[25]: DEAD_PROCESS: 0 console
Jan 25 16:13:28 godzfire shutdown[196]: reboot by NAME:
Jan 25 16:13:28 godzfire shutdown[196]: SHUTDOWN_TIME: 1232921608 396575
Jan 25 16:13:28 godzfire com.apple.loginwindow[25]: Shutdown NOW!
Jan 25 16:13:28 godzfire com.apple.loginwindow[25]: System shutdown time has arrived^G^G
Jan 25 16:13:28 godzfire com.apple.launchd[1] (com.parallels.desktop.launchdaemon[43]): Stray process with PGID equal to this dead job: PID 143 PPID 1 prldispservice
Jan 25 16:13:28 godzfire com.apple.launchd[1] (com.parallels.desktop.launchdaemon[43]): Exited: Terminated
Jan 25 16:14:17 localhost com.apple.launchctl.System[2]: kern.ipc.maxsockbuf: 8388608 -> 512000
Jan 25 16:14:17 localhost com.apple.launchctl.System[2]: net.inet.tcp.sendspace: 65536 -> 131072
Jan 25 16:14:17 localhost com.apple.launchctl.System[2]: net.inet.tcp.recvspace: 65536 -> 358400
Jan 25 16:14:18 localhost com.apple.launchd[1] (com.apple.blued): Unknown key for boolean: EnableTransactions
Jan 25 16:14:18 localhost com.apple.launchd[1] (org.cups.cupsd): Unknown key: SHAuthorizationRight
Jan 25 16:14:23 localhost kernel[0]: npvhash=4095
Jan 25 16:14:19 localhost kextd[13]: 425 cached, 0 uncached personalities to catalog
Jan 25 16:14:23 localhost kernel[0]: hi mem tramps at 0xffe00000
Jan 25 16:14:23 localhost kernel[0]: PAE enabled
Jan 25 16:14:23 localhost kernel[0]: 64 bit mode enabled
Jan 25 16:14:23 localhost kernel[0]: Darwin Kernel Version 9.6.0: Mon Nov 24 17:37:00 PST 2008; root:xnu-1228.9.59~1/RELEASE_I386
Message was edited by: GodzFire

I am getting the same thing on several iMacs. I don't have the exact logs right now, but it very closely matches the previous logs where the loginwindow process is executing the shutdown. It seems like it is happening with a bit of consistency on Sunday evenings. I have checked the Energy Saver preferences and my Retrospect preferences to make sure that there are no shutdown commands coming from those.
Anyone have any ideas why the loginwindow process would be forcing a shutdown?

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