Deleting clip from Timeline does not throw off sync

My editor just discovered when she deletes a clip from the Timeline, with locked audio tracks, the clips are not flagged as out of sync...the red out-of-ssync indicators do not appear.
I took the sequence in question and copy/pasted it into a new sequence. Interestingly there were a few out of sync clips with red indicators although the source sequence had no such red indicators. I then ripple deleted a clip from the head of the sequence and all of the red indicators disappeared from the Timeline.
If I ripple delete a clip further down the Timeline, only the red indicators after that point disappear.
This is under FCP 6.04.
Any ideas why this is happening? Thanks for your help.

are the audio and video clips "unlinked?" not sure if that would make a difference, but worth a look see.
Might try deleting preferences.

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Deleting clip from Timeline does not throw off sync

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