Deleting machines that aren't actually gone?

So we changed companies & domains at work and some of our machines were still pointed to the old Site Code info in their SCCM Client.  The only way we were able to fix these was to run the CCMSETUP /UNINSTALL command and then go delete the SMS key
from the registry under HKLM/Software/Microsoft/SMS.
Once that was done I could repush the client from SCCM and it would install fine.
We're getting to the end of our list of machines to fix, but some of the machines are actually old and don't exist any more which is why they say No for having the client.
If I just take all the machines that say No and delete them out of SCCM completely, if any of them a really active machines, they will show back up on their own as everything refreshes through the system...  right?  Just wanted to see if I'm in
any danger if I delete an actual machine from SCCM and if it would then not show back up and would be a phantom machine of some sort.
Thanks.

Clients will never change their assigned site automatically and you don't have to uninstall the client in order to re-assign it. You can either push the new one or run a script to re-assign them (given that you did not use a GPO to assign the clients - if
so: you would have to clean up the registry first).
Deleted clients will be added again by heartbeat discovery (if they were already reporting to the new site).
Torsten Meringer | http://www.mssccmfaq.de

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    Nov  5 18:07:27 iMac com.apple.backupd[21674]: Deleted backup /Volumes/iMac HD Time Machine/Backups.backupdb/iMac/2012-11-04-194018: 151.59 GB now available
    Nov  5 20:48:14 iMac com.apple.backupd[21804]: Deleted backup /Volumes/iMac HD Time Machine/Backups.backupdb/iMac/2012-11-04-184044: 151.57 GB now available
    Nov  5 21:33:14 iMac com.apple.backupd[22086]: Deleted backup /Volumes/iMac HD Time Machine/Backups.backupdb/iMac/2012-11-04-230603: 151.54 GB now available
    Nov  5 22:33:30 iMac com.apple.backupd[22370]: Deleted backup /Volumes/iMac HD Time Machine/Backups.backupdb/iMac/2012-11-04-220537: 151.49 GB now available
    Nov  5 23:32:21 iMac com.apple.backupd[23141]: Deleted backup /Volumes/iMac HD Time Machine/Backups.backupdb/iMac/2012-11-05-000610: 151.47 GB now available
    And here is the complete log of Time Machine executions around the first unexpected deletion:
    Nov  5 09:04:17 iMac com.apple.backupd[19826]: Starting standard backup
    Nov  5 09:04:27 iMac com.apple.backupd[19826]: Backing up to: /Volumes/iMac HD Time Machine/Backups.backupdb
    Nov  5 09:04:41 iMac com.apple.backupd[19826]: No pre-backup thinning needed: 9.08 GB requested (including padding), 159.15 GB available
    Nov  5 09:05:35 iMac com.apple.backupd[19826]: Copied 1075 files (2.2 GB) from volume Macintosh HD.
    Nov  5 09:05:38 iMac com.apple.backupd[19826]: No pre-backup thinning needed: 6.41 GB requested (including padding), 156.92 GB available
    Nov  5 09:05:40 iMac com.apple.backupd[19826]: Copied 175 files (1.1 MB) from volume Macintosh HD.
    Nov  5 09:05:43 iMac com.apple.backupd[19826]: Starting post-backup thinning
    Nov  5 09:05:43 iMac com.apple.backupd[19826]: No post-back up thinning needed: no expired backups exist
    Nov  5 09:05:43 iMac com.apple.backupd[19826]: Backup completed successfully.
    Nov  5 10:04:18 iMac com.apple.backupd[20110]: Starting standard backup
    Nov  5 10:04:18 iMac com.apple.backupd[20110]: Backing up to: /Volumes/iMac HD Time Machine/Backups.backupdb
    Nov  5 10:04:38 iMac com.apple.backupd[20110]: No pre-backup thinning needed: 10.56 GB requested (including padding), 156.92 GB available
    Nov  5 10:06:11 iMac com.apple.backupd[20110]: Copied 1314 files (3.5 GB) from volume Macintosh HD.
    Nov  5 10:06:22 iMac com.apple.backupd[20110]: No pre-backup thinning needed: 6.41 GB requested (including padding), 153.45 GB available
    Nov  5 10:06:32 iMac com.apple.backupd[20110]: Copied 744 files (1.1 MB) from volume Macintosh HD.
    Nov  5 10:06:36 iMac com.apple.backupd[20110]: Starting post-backup thinning
    Nov  5 10:07:01 iMac com.apple.backupd[20110]: Deleted backup /Volumes/iMac HD Time Machine/Backups.backupdb/iMac/2012-11-04-114210: 155.69 GB now available
    Nov  5 10:07:01 iMac com.apple.backupd[20110]: Post-back up thinning complete: 1 expired backups removed
    Nov  5 10:07:01 iMac com.apple.backupd[20110]: Backup completed successfully.
    Nov  5 11:04:17 iMac com.apple.backupd[20335]: Starting standard backup
    Nov  5 11:04:27 iMac com.apple.backupd[20335]: Backing up to: /Volumes/iMac HD Time Machine/Backups.backupdb
    Nov  5 11:04:43 iMac com.apple.backupd[20335]: No pre-backup thinning needed: 9.14 GB requested (including padding), 155.69 GB available
    Nov  5 11:05:58 iMac com.apple.backupd[20335]: Copied 1223 files (2.3 GB) from volume Macintosh HD.
    Nov  5 11:06:08 iMac com.apple.backupd[20335]: No pre-backup thinning needed: 6.41 GB requested (including padding), 153.41 GB available
    Nov  5 11:06:17 iMac com.apple.backupd[20335]: Copied 596 files (1.1 MB) from volume Macintosh HD.
    Nov  5 11:06:21 iMac com.apple.backupd[20335]: Starting post-backup thinning
    Nov  5 11:06:46 iMac com.apple.backupd[20335]: Deleted backup /Volumes/iMac HD Time Machine/Backups.backupdb/iMac/2012-11-04-103500: 155.68 GB now available
    Nov  5 11:06:46 iMac com.apple.backupd[20335]: Post-back up thinning complete: 1 expired backups removed
    Nov  5 11:06:46 iMac com.apple.backupd[20335]: Backup completed successfully.
    It's a bit disappointing this unexpected and opaque behavior.

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