Different portrait rotation behaviour between LR 4.1 and ACR 7.1?

I've only just recently got my hands on LR4 and have noticed a strange behaviour with 4.1.
As a bit of background, I shoot in Raw [Nikon D300], usually edit in ACR/PS then I use iPhoto to keep my finished Jpegs in so I can show slideshows on my Apple TV and readily sync photos on my iPhone. Historically I've taken finished images from Bridge and dragged them into iPhoto and all has been well.
However, I noticed something odd with my latest export of Jpegs from LR in that portrait images don't appear to be handled well. When I play a slideshow the portrait aspect photos are squashed to fit a landscape ratio. The Jpegs look normal in Bridge and also in Finder and Preview. They actually also initially appear in the correct aspect when viewing iPhoto events too. On digging a little deeper, if you try to edit one of these files in iPhoto it appears to be rotated on its side.
Now if I take the same Raw images and edit them in CS6 and export them into iPhoto they work completely fine.
What gives? Is there some form of rotation tagging descrepancy between the two Adobe products? Any idea of a work around?
[FYI runnning Lion 10.7.4 on a 2.8 Ghz i7 12Gb iMac with all products patched and up to date]

Hi Brett, it was the latest at the time, although it's just been updated again with the release of Aperture 3.3.
At any rate, I've not had a problem since. I should perhaps qualify my statement above, when I typed "reimporting from scratch", I meant downloading the Raw files from my cards again. After that all was fine, perhaps a hiccup on the initial import? I'll report if it happens again.

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