Directory doesn't really exist - linked to another

I have discovered a weird issue with my Lightroom catalog that, unfortunately, may have resulted in me inadvertently deleting some images. Some folders in the Folders pane are somehow "linked" for the lack of a better term. For example, I have the following two folders:
2006_04_29
2006-04-29
I'm trying to clean up my catalog so I've been moving/renaming (through Lightroom) to fix the issue. The weird thing is if I open an image in 2006_04_29 and look at the system file info, it shows it actually lives in 2006-04-29. Unfortunately, this is after I deleted a dozen or so folders.
I'm not sure if this may have happened back in the Lightroom 2/3 days before I knew not to move things outside of Lightroom, but I'm surprised the catalog optimization or synchronization both didn't fix it.
Any thoughts or suggestions?
Thanks,
Kevin

The oraInst.loc file contains the entry "inventory_loc=/home/orapdev/oraInventory"
I checked the above mentioned location and i issued
[applpdev@oraapps ~]$ cd /home/orapdev/
[applpdev@oraapps orapdev]$ ll
total 4
drwxrwxrwx 6 orapdev orapdev 4096 Nov 26 16:27 oraInventory
[applpdev@oraapps orapdev]$ cd oraInventory/
[applpdev@oraapps oraInventory]$ ll
total 20
drwxrwxrwx 2 orapdev orapdev 4096 Nov 26 16:47 Contents
drwxrwxrwx 2 orapdev orapdev 4096 Nov 30 20:21 ContentsXML
-rwxrwxrwx 1 orapdev orapdev   19 Nov 30 20:21 install.platform
drwxrwxrwx 2 orapdev orapdev 4096 Nov 30 20:21 locks
drwxrwxrwx 2 orapdev orapdev 4096 Nov 30 20:21 logs
The error showed when running the auto config is
[applpdev@oraapps pdev_oraapps]$ pwd
/pdev/p01/oracle/pixcomn/admin/scripts/pdev_oraapps
[applpdev@oraapps pdev_oraapps]$ ./adautocfg.sh
Enter the APPS user password:
ERROR: Directory  doesn't exist
[applpdev@oraapps pdev_oraapps]$

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