Disappearing Dock & Task Bar Icons

I just installed OSX 6.8 on my MacBook Pro.  Now some of the items in the dock no longer appear with their icons.  The dock has a few blank spaces in it, but if you mouse over the blank space the identifying text appears.  Same thing is true for the Task Bar that you get when you hit Command-Tab.  Any ideas?

Are those items Apple applications or 3rd party apps you installed and perhaps moved to a custom location?
Do the dock icons still work or not?

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