Disk utility can't repair disk (1 partition) on external hard drive

I've search here some to try to find the answer to my scenario, but I really don't understand how Disk Utility got involved in my external hard drive to begin with, so here's my question.
I have a 2TB Western Digital My Book Studio FW800 external that has 5 partitions, connected to my 2011 iMac. I had help doing the partitions and don't really remember the reasoning, but one is just for my SuperDuper! backup, one is Miscellaneous, one for movie clips off my camcorder, one for misc scanned photo's and one for my genealogy research.
I back up using Time Machine to a Time Capsule and also to this WD hard drive with SuperDuper!
Recently I'm getting a pop up message that "Mac OS X can't repair the disk "Genealogy"'.  And it needs to be reformatted.  It's become a read only disk.  When I look in Disk Utility it shows all the partitions as "Mac OS Extended (Journaled)" EXCEPT for the one in question.  I also noticed that there are a lot of files with "date created" being the same date in 1969!  These files may be letters I've written or photo's I added to that partition within the last few years.
I think I have to completely reformat the entire external hard drive to repair this, but I want to make sure.  Because it's going to be a major hassle backing it all up to another external (having to get one first) and then figuring out how to make the files that have turned "read only" in that one partition, back to their original state!
Does this sound right, that I have to reformat the entire external hard drive?  And how do I get the read-only files back to their original state.
Thanks, Sandy

I don't back them up.  There isn't much on them, besides the one I save video files too, but those are 2-3 min snippets of school events, that are just uploaded to youtube without any editing (like titles, fade ins, etc.) through iMovie. All those vid's are on original tapes I have.
The partition that is giving me problems, I do have most of that on my iMac's hard drive, just not as organized.  I guess it's just seeming overwhelming to re-created those files into the same file structure on my iMac, but I think it could be done.
I'm still not sure why my brother had me do the partitions like this.  In the past I had just two partitions, one for the back up and the other for random stuff that I didn't want to take up space on my iMac. 

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