Disk Utility says no problems but Diskwarrior disagrees

Need some advice. I ran Disk Utility yesterday to verify my drives before upgrading to 10.4.4 on my Dual 2GHz. It came up with some errors but said it couldn't fix them. Went to Diskwarrior which also said it couldn't fix it. Did a safe boot which is supposed to force an 'fsck' but the system never fully booted from that, probably failed at the fsck (the fans turned on full blast at the grey bootup screen then eventually powered off by itself). When I rebooted, I ran Disk Utility and it now reports the drive is fine. Diskwarrior still scoffs at that though.
Disk Utility said something about File Allocation Table mismatch.
Diskwarrior said the directory structure could not be repaired.
SMART says the drive is fine.
TechTool Pro reports a Bitmap mismatch and could not repair the drive.
Thing is, I don't see any problems with the drive at all. System boots fine and there are no corrupt files. It's a 3 month old 300GB Seagate so I don't think it's a hardware problem. But I've had some kernel panics related to my video iPod (the one where the G5 kernel panics if you have low space left on the iPod) which is where I'm guessing this all started from.
I've left it for now with Retrospect backing up the drive to a new external 250GB drive I had to buy just for this. I was planning on formatting the problem drive, testing it again and then restoring the Retrospect backup. (The only issue I've had with Retrospect is I Duplicated the problem drive to that new drive and had about 4000 files with different dates. I'm hoping that doesn't happen using the Backup function instead.)
Is this the right path? Or anybody think it could be a hardware issue? I've never done a full system volume backup with Retrospect, will I run into problems making the restored drive bootable again? And last, are there any other programs I should try?
BTW, I thought Journaling was supposed to fix all this!!

Welcome to Apple Discussions!
Backup your data on that drive as my FAQ explains:
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