Does syncing apps affect folders?

If I allow iTunes to sync my 80 or so apps, will it leave them organised in the folders I've carefully set up please?
Terry, East Grinstead, UK

Judging from the several threads that I have read about this, my best guess would be you have a 50/50 chance of syncing without the folders being destroyed or rearranged. Why don't you do a search in the upper right area of this site and type in "folders destroyed when syncing" or some variation of that wording and see what you can find.
I create all of my folders on the iPad and I have no problems at all when I sync. I have about 65 apps All of my folders have always stayed intact. I have a post from one user that I copied and pasted and this guy swears this works for him. I will share this with you.
THIS IS THE POST THAT I COPIED (forgive the capital letters - using my iPad and no way to edit!)
There is a secret as to why you are losing your folder arrangements.
They can automatically unpack on a sync.
We should all know there are screens off to the right of the valid eleven home pages. If your last page is full of icons and you inadvertently add another something is shoved off to the right. If you move home screens around using iTunes this also happens.
If any icon filled with apps falls off to the right it will unpack and make a mess. If you move a home page filled with folders which are filled with icons around you can lose them all as they will unpack when you sync to iTunes.
The best choice is to take the right most page and MAKE SURE NO FOLDERS ARE EVER IN THE RIGHT MOST PAGE. That gives you safety room from inadvertently scooting one or more folders into higher number screens. I place a few standard apps in the right most page to hold it in place.
CREATING FOLDERS
Second you are safer building your folders on the device itself. To do this I move everything off the bottom bar and use it as a placeholder (bus)to shuttle apps around as I figure out what group they should be added to. I have over 800 apps in 22 GB on the iPad now. Things are well organized and nice looking when scanning the home pages.
When setting it up I just added all the apps at once. Then as I made room on the home screens I paused made sure my 'bus' was empty, then shut down the iPad to power off and back on again. This cleans up memory and on reboot the iPad will add as many of the hidden apps to the space on your eleven home pages. There after it became a session of rinse and repeat until all the apps I wanted where filed away and arranged.
Use meaningful folder names.
Apps from ****
There are some real junk apps that some how I managed to grab in the past. Others are surpassed by obviously more powerful and functional apps that have recently appeared so there is no sense in keeping them. If you delete them off the iPad they will reappear on the next sync unless you delete them from iTunes.
How do you remember to delete them from iTunes too? When I get to the delete confirmation screen I take a screenshot which is stored in my Photos roll. Then I browse that roll while before the computer and find each app that needs to be permanently deleted. After deleting it from the PC I then delete the reminder picture.

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