Double Exposure RAW Files Poorly Processed

I have an Olympus OMD-EM5. I'm shooting double exposures and when I import the RAW files into Aperture, once the Aperture preview is generated the picture becomes horribly over processed. Saturation seems maxed out on things like leaves, but also colors shift: a pale blue flower turns deep purple. I tried shooting RAW + JPEGs and the JPEGs of course look fine in Aperture as they do in camera and are not reprocessed in any apparent way.  So the glitch seems to be in processing RAW double exposures.
Is anyone else working with double exposures seeing the same problem with their RAW files? Any ideas and what is happening?
Thanks

atnbirdie wrote:
The camera manual says "a RAW image recorded on a card can be overlaid with multiple exposures and stored as a separate image.
It might be -- iirc, this is how Canon does it -- that the resulting "separate image" is a JPG (or can be viewed correctly only as a JPG).

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