Downloaded apps not showing up in apps tab

I downloaded several apps using the itunes store, most were free, some I bought. After they all downloaded, only a few showed up in the Applications Tab on itunes. I found the ones that didn't show up on my computer and they downloaded as APP files in a different spot than the other files that do show up. I've already checked for available downloads and even re-downloaded some of the apps, but the same ones still won't show up. What do I do.

tried dragging but it won't let me. the apps that are showing up are in this file: _C:\Documents and Settings\Matt\My Documents\My Music\iTunes\Mobile Applications_. the apps that won't show up are in this file: _C:\Documents and Settings\Matt\My Documents\My Music\iTunes\Mobile Applications\Downloads_. then each application has it's own folder and inside that folder a file called download and a file called info. i can't open either file with my computer, it says i don't have the right program, even if i select itunes as the program to open them. it's like they downloaded the application but didn't open it up. the ones that worked have the itunes icon next to them and under type say Apple Device Application File. the ones that don't work have a smaller icon and say APP File.

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