Dreaded "invalid node structure" dealie

The MB had been running slowly and a lot of applications (particularly web browser) were having a hard time shutting down. I was occasionally required to do a hard restart. That being the case, I ran DU and got the "Invalid node structure" alert, saying the drive could not be repaired. I took it to a "genius" at the local Apple store and he said that such an error is due to a software issue and, as such, not repairable under warranty. "You have to get Disk Warrior or Tech Tool. That should fix it."
Well, I shelled out $100 for DW4 (which I know I should have, anyway) and it didn't fix anything. It said the directory couldn't be replaced due to disk malfunction (or somesuch). So, I figured it must be a bad HD, potentially. I even arranged for a take-in repair.
Well, today I decided to run an fsck in single-user mode, just to see what I could see. It, too showd the invalid node structure, as well as B-tree. It also stalled at the end. I thought, "OK, now I really did it." After a hard reboot, I ran DU again to verify disk. This time, it came up with no errors found, disk does not rquire repair, disk verified, etc.
I guess the question after all that - think I'm in the clear? What could the problem have been?
macbook 1.8GHz - PB G3 (Lombard) 333mHz   Mac OS X (10.4.9)  
macbook 1.8G - PB G3 (Lombard) 333mHz   Mac OS X (10.4.9)  

Thanks for the response.
When I got home from work, I ran DW. Unlike prevous attempts, it was able to rebuild and replace the directory. Re-ran Disk Utility once again, to be sure, and it came up as all good. Also, both DW and DU gave an A-OK to S.M.A.R.T. status.
After rebuilding the directory, everything's running much faster and I no longer have to force quit all the time. Seems to be doing its thing.
Fingers crossed ...
macbook 1.8G - PB G3 (Lombard) 333mHz   Mac OS X (10.4.9)  

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    this goes without a hitch and the macbook is just fine now. no invalid node when running verification.
    after scouring through OCZs forums i find this to be a reoccurring theme, but mostly on the vertex(1), and that not letting the computer go into hibernation will/might solve this.
    so my long winded question is this. anybody else have this happen to them? have you fixed it? and what kind of SSD do you have?

    Is your computer still under warranty? If so you might want to bring it to a genius bar. http://www.apple.com/retail/geniusbar/

  • Invalid node structure (4, 3980)

    I just tried to install 10.4.6 on my imac 17inch falt panel. ( os from mac store , black disk )
    First I ran "remember" to check the memory -all ok .
    Then I ran the hardware check that came with the computer- all ok .
    Then started an erase and install, choosing to install only the basic os ( no languages etc )
    Every thing went smoothly, finnished installing and waited for 30 seconds for it to auto restart.
    And it didn't restart .
    So I started up in single user mode and ran /sbin/fsck -fy
    then I get the message
    disk0s3: I/O error.
    Invalid node structure
    (4, 3980)
    **volume check failed.
    so there you have it . Any ideas of what happened ?
    Any Ideas of what I should do now .
    Did I just fry it ?
    thanks o-s-s-i

    Thankyou for the reply.
    and Thankyou for the link, I had never seen that before .
    I'm sure it will come in use again some day .
    Well, after doing what you said to do, things have improved a lot .
    I ran "aht" and every thing was fine.
    I don't have DW so I zero-ed out the data and reinstalled tiger.
    So now for the first time I can see the beginning of tiger.
    I can see the welcome words dance over the screen in 10 languages
    and then it asks me to register , then as soon as I type the first letter of my name
    it goes "boing" and welcomes me in 10 languages again.
    So a vast improvment on - invalid node structure (4, 3980).
    But still not in yet .
    Maybe I'll zero again and install one more time .
    Thanks again.

  • Invalid node structure, files are visible in single mode

    I did something stupid today. First i ran my mac until there was no disk space, resulted in failing booting up. Went into single mode and did a mount command and deleted some big files. And now the disk check is failing and still not able to boot ios. All the files showes up in single mode, but not sure how to proceed. When running fsck it gives invalid node structure error. Marry x-mas :) any ideas?

    You might try using Disk Warrior to fix the error, but Disk Utility cannot. Short of DW you will need to repartition and reformat your hard drive unless the Recovery HD partition is still usable. If it is then you can do the following:
    Install or Reinstall Lion/Mountain Lion from Scratch
    Be sure you backup your files to an external drive or second internal drive because the following procedure will remove everything from the hard drive.
    Boot to the Recovery HD:
    Restart the computer and after the chime press and hold down the COMMAND and R keys until the menu screen appears. Alternatively, restart the computer and after the chime press and hold down the OPTION key until the boot manager screen appears. Select the Recovery HD and click on the downward pointing arrow button.
    Erase the hard drive:
      1. Select Disk Utility from the main menu and click on the Continue button.
      2. After DU loads select your startup volume (usually Macintosh HD) from the
          left side list. Click on the Erase tab in the DU main window.
      3. Set the format type to Mac OS Extended (Journaled.) Optionally, click on
            the Security button and set the Zero Data option to one-pass. Click on
          the Erase button and wait until the process has completed.
      4. Quit DU and return to the main menu.
    Reinstall Lion: Select Reinstall Lion/Mountain Lion and click on the Install button.
    Note: You will need an active Internet connection. I suggest using Ethernet if possible
                because it is three times faster than wireless.

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