Drop shadow changes when layers merged

When saving a Photoshop file as a pdf or jpeg, my layers get flattened and the drop shadows I have around some of my elements become much lighter. Is there something I should be doing to my layers containing drop shadows to keep them in tact?  Also, when converting text to shapes my font colors sometimes change completely.  Any ideas?
Thanks in advance.

Is there something I should be doing to my layers containing drop shadows to keep them in tact?
Manually merge them with an empty layer to enforce all pixels to be "baked" with respect to current layer blending options. Also consider setting your group blending options differently. The changes you are seeing may be due to layers blending together outside their group when flattening the files, but not in the original state...
Mylenium

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