Dropped frames after upgrade to FCS2

Hi all,
Were getting dropped frames on capture since upgrading a system from 5.1.4 to fcp6 (FCS2)
System is MacPro with all updates installed. Raid is capable of 400MBs.
Prior to upgrade we captured 720P60 10bit uncompressed fine
Also playback of 2 layers in timeline with animated transparency on Trk2 was realtime, no dropped frames.
After upgradeto fcs2 + ATI1900XT + upgrade to Blackmagic driver 6.2
Capture of 720P60 8/10 bit FCP6 reports dropped frames after between 2>3 mins of capture on the fly from a non-contolable device.
Playback of a single stream is fine but if I add a track and lower the transparency FCP6 reports disk speed is to low to playback 2 streams.
The raid is osx extended. We did have it journaled even though we erased using just osx extended :-/ so re-formatted again and this time it stuck on just osx-extended.
I've set privacy on the raid for spotlight though did not do this before when it was working fine.
aja and blackmagic speed tests are reporting same speeds for the raid as prior to upgrade. 450MBs read 390MBs write.
We have a few external disks osx clones with old setup fcp5.1.4 on etc so will statup from one and see if this goes away.
Anyone else having capture playback framerate issues since upgrade?
Cheers
S

This gets harder to understand!..
So I re-boot off the internal with FCS2 and BM6.2 drivers on.
Open the projects. Add a clip to trk1.. add a clip above in trk2, animate transparency.. thinking yep.. will bomb out... nope.. now it plays fine as before!..
So between booting off another OSX drive with FCP 5.1.4 and BM6.1
Reboot off OSX drive with FCP6 and BM6.2 driver something changed :-/

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