Dual boot problems 10.3.9 and 10.4.6

I have a power mac G5 with 2 internal hard drives. The primary drive is running 10.3.9. I just installed 10.4.6 on the secondary hard drive. Ever since, the computer boots from the secondary drive and the primary hard drive will not mount. it won't come up as a startup disk in the system preferences, it only appears in the system profiler and disk utility. in system profiler, the partition is greyed out. in the disk utility, disk repair reports an error: invalid b-tree node size, which it is not able to fix. (read on as the drive atually works). when i disconnect the secondary drive, the primary drive running 10.3.9 boots and runs. i swapped the drives, moving the secondary as the primary. no change. i need to keep both systems running until i can update all my software. why is it that whatever both drives are connected only the drive running tiger ounts? any help? thanks!
power mac g5   Mac OS X (10.4.6)  

try booting up from your installer dvd, and choose startup disk from off the cd - see if they both show up.

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