Duplicate file name suddenly appearing in audio stems

I have a FCP project that I've been working in that includes sequences with Dialogue, SFX and Music audio stems cut in (as .wav files). The Dialogue stem is mono and is not affected by this issue. The SFX and Music stems were imported as SFX L, SFX R, Music L, Music R. After lining everything up, I panned the SFX and Music stems and stereo paired in FCP to keep the tracks together and in sync while we made additional picture changes.
Months have passed working in these sequences and I have just noticed that the Stereo SFX and Music stems in my current sequence all seem to suddenly have the same name. In other words, SFX L and SFX R both display SFX R in the sequence and Music L and Music R both display Music R as their file name in the sequence. Isolating each track and playing back confirms that the SFX L and Music L are still being referenced... FCP has just decided to call them SFX R and Music R instead.
Has anyone else had this experience? It seems to be some sort of corruption in the metadata or something. I ran a quick Audio EDL and everything looks correct... SFX L and Music L do come up. If I turn off stereo pairing and go to the item properties for these tracks, FCP will let me rename the file name to be correct again. Does anyone think this is worth doing? I don't want to end up with a corrupt project.
We have been duplicating sequences and copy/pasting video and audio to/from different timelines. Perhaps this is how this issue started... I have other reels in this show that this hasn't happened to.
Thanks for any advice!

It's probably faster and better to perform a match frame of the files in question, and re edit them over themselves. Just to refresh the names and references.
Jerry

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