Duplicate files....one "Chapter 1.pages" one "Chapter 1" on iCloud

I'm so tired of having to work so hard to get a good workflow going.
Tim Cook should sit everyone down around a table and ask, "What do we want iWork to do, what do we want iCloud to do, and what do we want them to do together?" Then after everyone agrees, he should just say, "OK, make it happen, cap'n."
OK, so here's today's issue:
I'm working on a book, and have it broken down by chapters. I was trying to work on it on my iPhone, iPad, and iMac, but it got to be too big a PITA to do anything on a phone-sized screen on the train, so I quit trying. Now I have a laptop, and am trying to get a workflow going.
Here's the question:
Now, for some reason, I have 2 versions of each document, some have the extension .pages, and some have none. They're different sizes too. I'm going to have to sort through them all and consolidate. So, when I do save them, which version should I put in iCloud, with or without the extension? I'm not using it on the iPhone, but want to be able to.

Sounds like the ripped tracks might have gotten matched to the wrong tracks in the store. Turn on the iCloud Status column by pulling down View > View Options, select "icloud status" and click OK. Find that album in your iTunes library and see what the status of all the tracks are. If they are all "matched" you can see what they are matched to by downloading them. To not lose any metadata it might be easier to create a new library.
1. Quit iTunes.
2. Re-launch it  while holding down the Option key. Click "new library."
3. Enable iTunes Match on the new, empty library.
4. Find the "matched" album in question, highlight all the tracks, right-click (or Control+click) and choose download.
5. After the tracks are finished downloading play them and see if they are the right tracks. If they are not report the mis-matches to iTunes Store support.

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