Duplicates in 2 music folders

Me and my sister both have I-pods, we share the same i-tunes but have different folders eg. Hannah's folder, Lukes folder.
Recently my sister discovered that my music had gone into her folder, however duplicates had not been made. I went on to my folder 1 week later and discovered her music had gone onto my folder plus the music which I had and she had on her folder. This created a number of duplicates (up to 5) aswell as this the duplicates had been put on to my sisters folder along with my music however if I uncheck songs on my music folder which my sister has on her folder it will uncheck both...How can I sort this out?
PC   Windows XP  

The article doesn't mention the iTunes Music folder. What is the relationship between the iTunes program, the iTunes Music folder, and the .xml file? Thanks for your reply.
Deanna

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