Edited clips are no longer synced to original cut.

After clipping 16 hours of video, my office updated from CS3 to CS4. When I open the projects in CS4, the clippings of the video are still the same size but many of the videos have either been replaced by a new source or the clipping is not synced to the original spot. When I opened the video on my buddy's CS3 version, it worked perfectly. Downgrading back to CS3 unfortunately is not an option. Is there anyway to fix this mess?

I edited a rough cut of my feature in CS3 then finished it CS4 without any serious problems. And hate Premiere CS4 but it did work so I can't trash talk it.
Try this. Open the video on your buddies CS3 system then export as AAF. Import the AAF into CS4 and see if that fixes it.
Open the project in After Effects and see if it's correct. If it is you can export a premiere project from there.
That stuff worked for me.

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