Editing in Photoshop CS4 rotates image

After making adjustments in Lightroom 3.2, if I then edit the image in Photoshop CS4, the image rotates slightly clockwise and affects any cropping and adjustments to the vertical I have already done in Lightroom. The rotation occurs as the image is opened in Photoshop so that when I return from Photoshop to Lightroom my image has changed (not counting those made in Photoshop). Why is this happening? I am working in Windows 7.

Thanks, Dorin, for your response. That sounds like the right explanation. Would CS5 handle the perspective adjustments and lens corrections correctly?
The files I am editing in Lightroom are pef (Pentax) or dng converted from pef by DxO. Right now I am right-clicking the image in Lightroom and selecting "Edit in Adobe Photoshop CS4". I get the same result with Ctrl+E; but Ctrl+Alt+E does nothing for me. Nothing happens with the latter. That may be because I am already using Topaz's tlfusionexpress2 as Lightroom's secondary editor.

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