Effect changes in the timeline not changing output.

So I used and external matte key ("set matte" in premiere speak). Rendered it and output it. The client wanted it to occur earlier. So I slide the matte reference clip earlier in the time line, leaving the effected clip in place.
Now the effect occurs (somewhat) twice. It happens in the new timing where is should, then it happens where it did (but without the background, just the foreground being keyed over black.) So it's seems to be trying to apply a matte key where there is no matte clip on the matte reference layer, but there WAS a matte clip in the reference layer
I've reapplied the effects, relayed the video tracks, deleted the renders about a hundred times and rerendered, applied solid black/white to the matte reference layer, anything I can think of. It seems this effect is somehow "Cached" in the timeline and won't get released.
It gets weirder. Sometimes I'll render it and it looks fine. Then I'll output a (Prores HQ) master and the black will be in the output, but not the master. Then I'll reopen the master and it's got the black.
I remember posting a similar question a while ago, but never saw any final resolution. How can the output file be different from the rendered timeline? It's starting to make me feel like premiere is almost unusable if you can't reliably get a product out. For me, this is a serious problem.
Anyone have any idea? There may be a simple solution, I just can't figure it out.
Thanks.

Jeff,
I got it figured out:
File / Revert to Original did not work.
However, this did work:
The updated PPro Sequence was/is shown in the Encore Project Assets panel, so...
I deleted the old/exising Timeline (in Encore).
I highlighted the new/updated Premiere Pro Sequence in the Encore Project Assets panel.
I clicked on the 'Create A New Item' icon at the bottom of the Project Assets panel.
Then, I clicked on 'Timeline'
It  (Encore) then created a New Timeline from the newly/update sequence that I had updated in PPro.
As far as the difference between a Timeline and a Sequence goes, I think I also answered that question for myself also..
A 'sequence' is an asset that can be used in a Timeline.
A 'timeline' is an organization of assets layed out in chronological order.
I do appreciate your help though.  Everyone on the forum has been great!
Thanks again!
Kent

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