Effects in exported video render incorrectly

I've been trying to export a sequence that includes a rotated shot with greenscreen. The problem is every time I try to export the sequence in compressor the shot is rotated back to 0 degrees. Everything else including the greenscreen in the same shot exports correctly. If I render the shot in the timeling in FCP it looks correct. Any help is appreciated.

Thanks for the quick reply. But then why does the still's properties (in my bin) show the pixel aspect ratio as 1.3333 (not square pixels, 1.0) and should it not appear incorrectly in both the preview renders and the exported video ? This seems inconsitent to me.

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