Ejecting external disk drive--eject drive only or "both partitions"?

Hello! I have a new Macbook Pro and just used Time Machine for the first time to back up all my data. I am ready to eject the GoFlex external drive, but I received this message:
“FreeAgent GoFlex Drive” is a partition on a disk that has 2 partitions. Do you want to eject “FreeAgent GoFlex Drive” only, or both partitions?
Does this mean the GoFlex external drive has 2 partitions? Or does it mean one partition is on the GoFlex drive and the other drive is on my laptop?
Any advice on which option I should choose?
Thanks very much!

FYI, I chose "eject all" and the world didn't end, so that's good. If anyone can explain to me what I did, though, I'd appreciate it. Many thanks!

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