EMails are missing after Snow Leapard to Mountian Lion migration

Finally received my I7 27" iMac. I took my Time Machine back up from my Snow Leopard Mac Pro and migrated everything over to the new iMac, Everything looks like it came over without a hitch but while I have all of my Mailboxes and folders and the one ON MY MAC, none of the existing mail folders has any actual emails in the folders, only the iCloud account and those go back several months. I checked the Library folder on the iMac and it seems that Mail accounts are listed under Mail>V2 but none of the mail is showing up.
Does anyone know how to correct this? Looks like I'll be using my Mac Pro for a bit longer.

I tried that all the emails appear in a separate IMPORT folder. I can then move the appropriate emails into the correct folder but that's a lot of emails.I have restored from TM back ups before and never had this issue. I wonder if it was due to moving from SL to ML.

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EMails are missing after Snow Leapard to Mountian Lion migration

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