Encode Video Files not working for avi files

Hi,
I've been trying to convert some .avi files to apple format using Lion's native 'Encode video files' function however keep getting a 'avconvert: source file not found for source file://fileparthhere avconvert: failed to create an export session. Check setup
I can't work out why as this has worked before in Lion and works fine for other video formats. The only thing I've done is remove Final Cut Express HD and can't add it again as I don't own it anymore
Suggestions? Is there a encoder to make this work or should it work anyway?
Thanks

If you click Yes the project file will be updated when you save it. That has nothing to do with the media.
Are the Lesson and Media folders still in the Book Files folder (or whatever it's called)?
Select one of the clips in the browser and use Edit>Item Properties. One of the first lines is Source. That gives you the file path for where your media is supposed to be located. What does it say? If nothing is there, use the File>Reconnect function and point the application to where the media is located.

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