Encoding is messing up track order

When I uploaded some CDs recently I realized that one or two of the tracks were placed at the end of the listing when I list by Artist or Album in the library, for instance, one lists by 1-2-3-4-5-6-7-8-9-11-10.
I tried to figure out what the problem was, and it seems that all the out of place tracks say under their summary "Encoded with: iTunes v4.0.1", and the rest of the CD says "Unknown" instead. So I assume that's the problem, but I don't know how to fix it. Any ideas?

I'm having the same problem, also with 10.6.8  It started about 10 days ago.
I have started using Logitech Media Server to support a Squeezebox Touch, which may or may not be related.
I do not have a cause or a permanent fix.  However, I find that after rebooting Itunes shows the library with the correct dates and sort order....for a while.
Other symptoms include downloaded podcasts showing up as unreadable on my ipod (it thinks they are books).

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