Encrypting an external disk with two partitions

I have a large external disk that I'm going to be using for Carbon Copy Cloner backups.  I want the disk to have two partitions, and I want the whole thing to be encrypted with Full Disk Encryption.  Should I (a) first partition the disk and then encrypt each partition, or (b) encrypt the physical disk and then partition the result?  I think (a) is the best path (it looks like it's at least possible), but advice would be appreciated -- thanks!

Hi,
according to this http://support.mediafour.com/entries/170474-macdrive-compatibility-with-hard-dis ks-with-multiple-partition-types-i-e-dual-format that 'feature' is currently not supported by MAcDrive.
Regards
Stefan

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