Enterprise Mode - Not Updating From XML File

I've used GPMC to deploy the settings for Enterprise Mode within IE 11, and initially the XML file was pulled in my IE jus fine.  However, to simulate a real world test, I added a few sites and removed a site or two and now it seems to be holding onto
the initial list and not pulling the updated list.  
I've tried doing a gpupdate, but that hasn't helped.  Any ideas?  Am I missing something?

did you use the site list manager tool, or edit the XML by hand?
if you edited by hand, did you increase the file version number ?
http://technet.microsoft.com/en-us/library/dn640701.aspx
Don
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