Error tranfering purchasesfrom my iphone to itunes

Hi, I am having a strange problem after updating my iphone 32gb 3gs from os3.1.3 to ios4 and itunes to the latest version 9.2. My phone is NOT jailbroken.
When i plug in my iphone and right click > transfer purchases (to transfer my apps which i downloaded on my iphone to my PC) i get a problem where it only transfers 1 app at a time and then stops..i have to keep right clicking and click transfer purchases for each app which is very annoying when i have alot of new downloaded apps. Ive never had this problem with the older version itunes, so im wondering is there a fix and has anyone else experienced this problem.
Iv got quite a few apps in my itunes library and a lot installed on my iphone.

the problem i described above has changed now...when i right click my iphone that is shown in itunes and press transfer purchases..it shows up on the status that it is transfering new apps that are on my iphone but the apps are not actually being transfered...when i check the apps directory no new apps have been transfered. I dont even get the single app transfer that i got previously..please help...

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