Error while updating SAP Integration Kit XI 3.1 to SP3

Dear All,
I have updated BusinessObjects Enterprise XI 3.1 and Integration Kits for SAP XI 3.1 to SP3.
The update of BusinessObjects Enterprise XI 3.1 was fine. While updating IK for SAP, the installation shown the following error
sapweb_rri.dll failed to register.
sapweb_parameter.dll failed to register
Then I completed the installation by 'Ignore' ing the above installer informations.
Now I am getting the following error
"Account information not recognized: Plugin Manager error: Unable to locate the requested plugin secSAPR3 on the server. (FWB 00006)"
Before the update, the setup was working fine.
Does this ignored error caused the problem?
Please help me to resolve the issue.
Thanks and Regards,
Yuvaraj

Thank you.
I have the following questions, for this full installation of IK SP3,
I have imported transports from IK XI 3.1 for R/3 and BO connection in R/3.
Does the transport that comes with IK SP3 is modified?
And also some reports are developed based on the datas from R/3.
Does this complete uninstallation of IK affects the existing contents?
Regards,
Yuvaraj.

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Message class....... "RSPC"
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