Errors when Exporting PDF to various formats

I have a 231 Page PDF that consists of text, scanned images/pages of text, metadata, comments and hidden text. The document is a company manual/handbook.  I am working on a project to pull all this into InDesign in order to make the document easily and quickly editable.  The problem is that the original PDF was created with Word with all the elements I've listed and the main problem being the scanned pages of text (from previous versions of the manual) just inserted in word before being exported.  So, I can't just copy and paste everything into InDesign because a lot of the text is actually scanned pages.
Originally, I got around this by running the OCR Engine and then Command-A > Command-C, etc.  The problem there is that the formatting is completely messed up.  Line breaks all over, etc.  I removed all formatting (including line breaks) by copying and pasting all of the text into Safari's Google search box and then copying/pasting that back into Word (which will eventually simply serve as the file InDesign pulls the text from).  Now I'm going through adding in text formatting (paragraph breaks, etc.) by flipping pages of the original manual while hitting "Enter" in Word.
Now, I see a feature in Acrobat 9 Pro that allows me to export to Word, RTF, etc.  However, I keep getting some errors.  I've managed to get rid of all but one - Bad Fonts.  Adobe pops up this "Bad Font" error and tells me the file has not been saved.  Additionally, I've managed to get through 116 pages of the document saving process when exporting to "Text - Accessible" and then Acrobat 9 Pro just quits.
Any thoughts on how to get around this error or fix it?  Any other time saving tips?
Thanks

Hello,
It seems that the problem is related to particular PDF file.
1. Try running OCR on it via Tools -> Text Recognition -> In This File, and then convert the file.
2. Print the file to Adobe PDF printer and then try to Export it into Excel.
Regards,
Anoop

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