Exchange 2010 / Outlook 2010 /Outlook 2013 spam filtering

Hi,
We use Exchange 2010 Mailserver and MS Outlook 2010/2013 mail clients. I'm quite confused about configuring junk mail filtering, so can somebody give me few simple answers.
If i'm not wrong basically it goes like that:
Filtering can be made on server/mailbox level, when it can be configured using Exchange powershell. The other way is MS Outlook Junk filtering and it can be configured using GPO.
My first question is, are those two ways completely separated or not? I have found articles which are conflicting in my opinion. For example this speaks how to configure Outlook junk filtering using powershell which should not be possible. Or does Outlook
mean OWA in this example?
http://beccabits.com/2011/10/07/how-to-bulk-modify-safe-senders-list-in-outlook-with-exchange-management-shell/
Second question is if i configure MS Outlook Safe Senders list i can see changes using Exchange powershell which means that mailbox junk filtering can be configured through MS Outlook. Is this correct?
Third question concerns MS Outlook safe senders list which i try to load from txt-file using GPO. Problem is that it works only some users. Checked the situation using process monitor and looks like Outlook reads only junkmailimportlists reqkey and
not the other keys, for example junkmailsafesendersfile. Reqkeys have been loaded from GPO correct anyway. I have tried to fix this and sometimes the only way looks to be updating junkmail settings through OWA and sometimes update-safelist from powershell.
I have tried to update all users safelist using powershell but it doesn't work. How to fix this? We have thousands of users and fixing one by one is not the solution
Thanks in advance
Tried a little more now. Looks like only updating Junk mail list trough OWA helps the situation, when Outlook SafeSenders list do not update using GPO. After using OWA, Outlook GPO works.
Using OWA is not the solution as i said before but is it possible to do the same thing by for example adding some address to every users mailbox safe senders list using powershell? That updates users safelist like OWA do or am i wrong? 
~ Jukka ~ 

Hi Jukka,
Based on my knowledge, Outlook Junk filter is only working on the Outlook client side.
The emails have passed the Edge/Hub server and delivered into MBX server, if the emails matched the Outlook Junk filter conditions, they moved into Junk E-mail Folder directly.
If we don't want the junk e-mails or spams delivered into our Exchange server, we can enable the Anti-Spam and Antivirus in Exchange 2010.
More details in the following articles:
Understanding Anti-Spam and Antivirus Functionality
http://technet.microsoft.com/en-us/library/aa997658(v=exchg.141).aspx
Overview of the Junk Email Filter
http://office.microsoft.com/en-us/outlook-help/overview-of-the-junk-email-filter-HP010355048.aspx
Change the level of protection in the Junk Email Filter
http://office.microsoft.com/en-us/outlook-help/change-the-level-of-protection-in-the-junk-email-filter-HP010356454.aspx
Thanks
Mavis
Mavis Huang
TechNet Community Support

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    All the emails with attachments are now visible and now the properties still says "Last synchronized on: Never" but now "Server folder contains: 2,007" and "Offline folder contains: 1,998".
    Well I then clear the filter and low and behold, "Last syncronized on: Never" "folder contains: 2,007" and "Offline folder contains:" wait for it..................     "2,007"! And new items with attachments
    are coming in.
    WHAT THE _____. This is BAD because I am tasked with rolling out Office 2013 and caching is a must for my environment! But I cannot go live with such a bug or misconfiguration.
    I've seen a few threads around the interweb about similar situations but nothing very clear and no real troubleshooting details.

    Ok, I did more digging this time on the exchange server. I get see this error in the event viewer.
    Log Name:      Application
    Source:        MSExchangeIS
    Date:          5/2/2014 1:59:24 PM
    Event ID:      9646
    Task Category: General
    Level:         Error
    Keywords:      Classic
    User:          N/A
    Computer:      contoso.com
    Description:
    Mapi session "5fa396f3-d773-457a-8cfb-1e4d49bff426: /o=/ou=First Administrative Group/cn=Recipients/cn=myself" exceeded the maximum of 500 objects of type "objtFolder".
    So Why is this happening. I read it will cause all kinds of sync problems. Is it because I have a whole bunch of shared accounts in my folder list? I know I certainly don't have 500 folders!
    I also just stumbled across this sub folder "Sync Issues" and "Local Failures" when looking at the number of folders I have and a whole bunch of errors.
    13:43:34 Synchronizer Version 15.0.4605
    13:43:34 Synchronizing Mailbox 'Me'
    13:43:35 Synchronizing local changes in folder 'Sync Issues'
    13:43:35 Uploading to server 'exchagne.contoso.com'
    13:43:35 Error synchronizing message 'Synchronization Log: '
    13:43:35                               
     [80040305-54A-4DE-324]
    13:43:35                               
     Your server administrator has limited the number of items you can open simultaneously. Try closing messages you have opened or removing attachments and images from unsent messages you are composing.
    13:43:35                               
     Microsoft Exchange Information Store
    13:43:35                               
     For more information on this failure, click the URL below:
    13:43:35                               
     http://www.microsoft.com/support/prodredirect/outlook2000_us.asp?err=80040305-54a-4de-324
    13:43:35 Moved a message that failed synchronization to 'Local Failures'. Message subject -> 'Synchronization Log: '. You can view this message in your offline folder only.
    13:43:35 Done

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