Export as QuickTime Movie - lose audio sync

I have a 10 minute project that basically is a sequence of 10 nested sequences. It is an HDV project. I need to export it as a QuickTime Movie to maintain the ability to show it in HD. When I do so (using Export->QuickTime Movie - I am not using "Using QuickTime Conversion"), I maintain "Current Settings". The resulting .mov file, when played back in QuickTime Player (or anything else) has a progressively severe loss of audio sync. This is not present when playing the project within the timeline in FCP (6.0.3).
I have tried opening the project on a different computer with a virgin version of FCP 6.0.3, with the same results. I also made sure to render the individual sequences as well as the master sequence. I created a new sequence and added the individual chapters again, with the same result. I tried using the Media Manager to bring the project over to another computer - same problem. I also took this to an Apple One-to-One class with a FCP expert who couldn't figure it out either.
I could really use some help here.

First of all, thank you for responding.
I don't have a capture delay. The audio rate is 48 khz.
Interestingly, I had previously tried the separate export and stitching you suggested, but a strange thing occurred. If the resulting quicktime movie was created through a Save As... command, you wind up with a self-contained movie. When I did that, I started to get weird audio repetitions or dropouts as the movie went on. On the other hand, if I left it a reference movie, this didn't happen.
Anyway, this is a workaround, but it means that the whole thing has to be done over every time I make any change at all, and I am also concerned about getting rid of this problem for the future.
Any other thoughts?

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