Export from STP loses pasted clips

I am having a recurring issue with STP.  If I create a new audio file, and then cut and paste segments from other audio files, parts are disappearing when exporting. If I save the file as a STAP, it is there, but if it is saved (or exported) as wav/aiff/mp3 it will have pieces missing in the flattened file.   It's driving me insane. Any ideas?
STP Version - 3.0.1

I just tried this with three stereo mp3s, made edits and copy/paste, saved as a wave file, and worked no problem.
Are all of the files you're copying from the same channel count (i.e., mono, stereo, multichannel)? Are you just doing a save as to save the audio file project as some other file type?

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