Export or "Save As" PDF - missing shapes in final created PDF

Hello,
I am using Illustrator CS5.
I created a brochure with some images, shapes and text with minimal effects (some drop shadow).
When I export or do a "save as" pdf, four of my shapes do not appear in the created pdf.
What type of reasons would create missing vector graphic shapes?
Do I need to flatten my work? If so, what is the best method for this?
Any guidance would be appreciated.
thanks,
Simon

I figured it out.
There was a setting in my pdf that had adobe layers on. I turned it off.
All good now!

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