Export settings for best quality for pages with letters etc.

Hi, I am trying to make video of a musical piece, featuring the score of the piece with pages turning following the progression of the music. I made the video in Adobe After Effects CS5 and exported it so it would be lossless. The video itself is a .mov file and looks great when I view it in Quicktime, but when I import it into FCE the quality goes down a bit. I don't know if FCE is handling the clips correctly or if it's just for making it quicker to view. Any suggestions on export settings from FCE for best quality of a video of this nature, so that the notes are clearly readable.
Thanks in advance
Ps. It has to be in a format suitable for Youtube.

Under "Sequence" and in "Settings" and in the tab "Render Control" I have: Frame Rate: 100% Resolution: 100%.
If that is what you were referring to... but under the tab which is called RT and is located left of the timeline and left of the timecode. There I have checked : Safe RT, (Playback Video Quality) Dynamic, (Playback Frame Rate) High.
There might be a way to import the clip in better quality (so it doesn't downgrade the quality).
Was mostly trying to find out with the export but it might have something to do with this.
Thanks

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