Export with Anamorphic video

I've been working on getting a good rip of my Hunt for Red October DVD working for the AppleTV recently, but I've run into a problem. I ripped the DVD with Strict Anamorphic in Handbrake, and I also cropped it. The issue with cropping is this striped out the subtitles for the russian part of the film. Later on I went in and recreated the subtitles as a text track and added them into the movie. From here I can export the video with the text track, and quicktime will superimpose the text and reexport the text with the video.
The problem that arises is that the video I'm exporting was anamorphic source, and I want to maintain that so I don't have to re-encode the entire video at a new resolution. Is there any way to maintain anamorphic video within quicktime during an export?

I'm simply wondering if I can export a video from quicktime while keeping the video in an anamorphic frame.
I'm not asking for help using Handbrake on a DVD that I legally own.

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