Exporting a masked transparent  FLV from PSD

A few days ago, i exported a quicktime Animation from
photoshop which had a mask around an object so that the outside of
the object was masked and transparent. encoded to FLV and imported
to Flash and it worked fine. There was something about it I decided
to change the next day, but I haven't been able to repeat the
process and get the transparency in the video.
I am placing it on the stage over a background image fro a
website.
Please help, it is driving me nuts.

I tried importing the whole PSD document instead of the
animation export and it seems to do the trick.
making video from layers in import, now if I can get the
animation to loop, I'd be in heaven.

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