Exporting audio with video like it was recordedw

We have shot a ton of video with the dvx-100 and 100a. sometimes final cut captures it weird and i'll have a -03:37 or whatever sync problem. If there is an easier way tell me, i want to export the video after i sync it so I can reimport it and just cut it from there. Or is there another way to do this?

I already synced it,
Ah. Good for you.
now i want to export it to a format which can have two mono tracks instead of a mixed pair.
That's not really the issue. The issue is how your target app will handle the two tracks. Where are you going with the file? Usually you'd just pan both tracks to separate L and R. Then, even though theyare being mixed by your playback app, they're still separated.
One of the channels has a tram on it, which i need, the other is just room tone(camera mic) .
So you don't need both? Or you want to be able to mix them separately in the next app?
the audio was recorded with two mono channels, I need the same with the export.
Not easy to grasp what you want form this post, glad you made a second shot at trying to ask the question. but you still haven't offered up enough information yet.
bogiesan

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