Exporting .avi to .mov using h264 loses sound after a few seconds

Here's a weird one. I am editing some movie clips, and when I do an export to .mov format using h264 compression, the audio drops out after a 8-10 seconds.
At first I thought it was happening after an edit jump, but nope -- it just cuts out for some reason. I also cannot export to MP4 format without losing the audio completely (shows as MPEG Layer 3 audio in the properties window of the original). When I look at the Properties for the exported movie, I can see the audio length is not the full length of the video.
I have edited clips like this before in QuickTime with no issues, not sure what is going on. I tested on MPEG Streamclip and I can export to either format with no sound issues.

Hello George,
Sorry I can't help you with your problem. But it is TOO much of a coincidence that YOU do everyday (try to, lately!) what I am trying for the first time-- converting .avi files to .mov files. I just got a cheap movie cam and it saves files to avi format. I am able to transfer them successfully to my Mac, but cannot find a third party avi converter. If you can help please email me: [email protected]
thank you for your time and I hope SOMEONE out there will help YOU!

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