Exporting cuts off last two frames of project

For the last while now, Premiere CS6 and Media Encoder continue to cut off the last two frames of any project I export. It doesn't matter what export formats I choose, it always happens. My short term solution has been to extend the project by two frames but sometimes that doesn't even work. Anyone else have this issue? It's really becoming a bother. And yes, I've checked to make sure the entire project is selected in the export and media encoder windows.
Thanks

stk97
Thanks for the follow up information.
Before we advance on the cropping details and considerations, let us rule in or out the set up of the project as well as the export choices and settings as causes of the problems.
If you have video 1440 x 1080 HD anamorphic 16:9, then the project preset should be (assuming NTSC setup)
NTSC
AVCHD
HD1080i30
Now, when you go to export your edited Timeline content, if we go for a H.264.mov export
Share/Computer/QuickTime with Presets = NTSC DV 16:9
Click on the Advanced Button there.
Under the Advanced Button/Video Tab, set according to the screenshot for Video Tab....
Some of the export settings in the screenshot got cut off in the screen capture. The essential ones are the ones you see (for now).
The BItrate which is further down (not seen here) is left with no check mark before "Limit Data Rate To...". We will work on that later if file size becoms an issue. The main purpose of the above is to see if we can get a good video just with attention to project setup and export settings.
We will be watching for your results.
If any questions or need clarification on any of this, please do not hesitate to ask.
Thanks.
ATR

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