Exporting MIDI in Logic Express 9

I use logic to record VST drum tracks using Superior Drummer. I may record a few different takes that are in my take folder. When I'm editing the MIDI take, I may add some extra bass drum hits or cymbal crashes.
Here is my problem: When I select the take to export, after its saved to my desktop, I'll reimport it to test it. It imorts 2 MIDI files. The first one is the main file with the track and CC info. the second MIDI track is the added hits that I edited earlier. I now have to merge the two files to make them play correctly.
This happens when I send to my friend who is also using superior drummer, but on Nuendo.
I have normalized the track and try to merge is but no luck!
Does Logic make a track layer with added MIDI information on top of the played take MIDI track?
Also, If I have multiple MIDI takes and select the one take I want to export, I get all the takes in the export. How do I only export the selected take and not have to delete all my takes?
Any help would be greatly appreciated.
KBregs

I will ask my question on another way. How guys are you using the punch in/out mode ? tell me the context and the options selected for this.
For me it is made for replace a part of a recording that you don't like and repeat that until you get te right take.
I've rea the manual but I don't find what I want to do.
Image you record 4 measures and you don't like the 2 last measures. You want to replace it. It's what I want to do. For me I thought you could put the cycle mode on over the 4 measures and put the punch in/out mode on the 2 last measures with the replace button activated. That's doesnt work. After I've tried the same method with selecting the take folder option in the project record option. But I can't heard the 4 measures in the loop. I just heard the 2 last measures that are between the punch in/out selectors.
Could you help me please?
Thanks

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