Exporting MJPEG from FCP using aurora igniter

Hi,
I'm using final cut pro 4.5 HD with an DVC PRO source file captured via firewire, and a watermark element on another video track. I'm trying to export the file as a quicktime movie using current settings, but I'm getting interlacing or field order problems on the exported video.
My settings are as follows:
Sequence Settings
frame size 720x480 NTSC DV 3:2
pixel aspect ratio NTSC/CCIR 601 DV
Field DOminace: Upper Odd
COmpressor: Aurora Mjpeg A
Aurora Advanced preferences: field order also set to upper
Any idea on why this happens? I've tried some other codecs in the compressor tab of the sequence settings (such as DVC Pro) and they export without any interlacing issues, but the quality is not as good.
Brian
  Mac OS X (10.4.6)  

Thanks James- simple enough and it worked.
A bit of a mystery why even the pro version of QT Player wouldn't just automatically pick up the anamorphic flag, as it does when you give it a file created using QT conversion from FCP?
Little things like this cause headaches. I find the documentation on this basic area of aspect ratio, that everyone has to deal with all the time, to be quite evasive or unclear on the whole and the terminology bizarre.
I assume once saved once with 'conform aperture' set to 'clean' it will always play in 16:9 on any QT player? The client won't have the Pro version of QT- that's for sure.
Thanks again very much for your quick help,
Andrew

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