Exporting MP4 file to iPod Hangs QuickTime Pro

I'm trying to export an MP4 video file to ipod .m4v using Export option in QuickTime - and it just hangs and the status bar stops moving about 1/8th of the way through.
Any idea why? How can I export this file successfully? What options do I have?

The movie is an unusual dimension. Normally video is 4:3 which would be 640X480. I don't see it as an issue (yet).
A 45 minute file is going to take a long time to export. Nothing about the codecs should prevent export.
Could you try with a one minute "cut" and see if it hangs?
Select a minute and "copy". Open a new player and "paste" and use this new file for your export test.
If it "hangs" use the movie properties window to change the video track dimensions to 640X480 and try again.

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