Exporting multiple video tracks as 1 file with different effects on each track.

I am currently trying to export 3 video tracks as 1 mp4.
Each track has exactly the same footage, but with different effects to achieve a certain aesthetic.
When I view the sequence it in premiere all 3 tracks are displayed correclty.
The exported version appears to only export the uppermost track, track 3.
Track 2 and 3 have opacity set to 47%.
Track 1 opacity is set to 100%.
I have tried exporting a test project that has multiple layers and there was no problem.
I have NOT tried exporting a test project with exactly the same opacities and effects, as it's a bit time consuming. I will do so if I can't get a stisafctory solution from the forums.
The problem, I believe, is down to the layering of effects. In this case on track 3 I have procamp, which is boosting the red in 1 layer. This is the image I get once the final piece is exported - track 3's.
So..
How do I get the effects of each layer to show properly in the export?
and
Why is the exported version missing tracks (or the effects of tracks) 1 and 2?

You didn't answer probably the most important question: whether you're using hardware or software Mercury Playback Engine (MPE). However, since you've set Maximum Render Quality on, it's largely irrelevant.
When you're using hardware MPE or have the MRQ flag set for your export, rendering is performed with linear color. Linear color processing affects how color channels and alpha channels are composited--anything less than 100% opacity is subject to linear color processing. Check out this article for more information on linear color/linear light: Linear Light - Artbeats
Since it sounds like you're seeing the results you expect in the Program Monitor, but not export, I'll wager you're not using hardware MPE. Only by disabling the Maximum Render Quality flag on export will you be able to get results that match what you see in the Program Monitor (within reason, of course). The only way you could see the effects of linear color within Premiere would be to either use a qualified GPU that enables hardware MPE, or go into your Sequence Settings and check the "Maximum Render Quality" option and then render previews.
Please let me know if that helps resolve the issue, or at least provide a little insight into the problem.

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