Exporting to H264 using AAC input : sound skips

Hi there,
Let me try to get you guys all the information in one big chunk.
My computer :
Intel Core i7 860
8gb DDR3 RAM
Western Digital WD5000AAKS HDD
ATI Radeon HD4870
ASUS P7P55D motherboard
Windows 7 Home Premium (x64)
Premiere Elements 8.0.1
Everything is up to date to the latest version/driver
The source material :
Video :
Video.m2ts
1920x1080 AVCHD (Panasonic HDC-HS250, REC MODE: HA1920 [Highest quality])
177 mb
Audio :
Case 1 :
MP3FILE.MP3
Stereo
Case 2 :
AACFILE.M4A
Stereo
Export settings (advanced) :
Format: Quicktime
Export Video : Yes
Export Audio : Yes
Video tab :
Video Codec Section
Video Codec: H.264
Basic Settings Section
Quality: 80
Width : 1280
Height : 720
Frame Rate: 30
Field Type: Progressive
Aspect: Square Pixels
Render at Maximum Depth : No
Codec Settings: 24 bit
Advanced Settings Section
Set Key Frame Distance : Yes
Key Frame Distance (framerate):: 24
Optimize Stills: No
Frame Reordering: No
Bitrate Settings Section
Set Bitrate : Yes
Bitrate (kbps):: Yes, 4500
Audio Tab :
Audio Codec Section
Audio Codec: AAC
Basic Audio Settings
Sample Rate: 48000 Hz
Channels : Stereo
The problem :
It's quite simple, let’s expose with a couple of cases.
Case 1: I use the MP3 file as the soundtrack (in the soundtrack “lane”), I export the clip. Everything is super, including audio.
Case 2: I use the AAC file as the soundtrack. I export the clip. The audio skips beats at irregular times.
Case 3 : I use both the MP3 and AAC file as the soundtrack. I export the clip. The audio skips beats at irregular times.
As soon as I put an AAC file in there, the audio skipping begins. The video is fine, high quality all the way.
What I checked :
- The AAC file sounds perfect in every other audio program prior to encoding. The sound file is not the cause. I tried using multiple AAC and MP3 files, the problem is constant.
- I am aware of the limits of the hardware and I know for SURE I’m not hitting them. This is not hardware related.
- Every driver and every software is up to date.
What’s left :
Apart from transcoding my AAC files to MP3 every time I want to use them in movies, any idea?

Actually, the AAC is going to be more dependent on your I/O sub-system, than on your CPU. Please give us the details of your I/O, i.e. your HDD's, their size, speed, controller type and how you have the HDD's allocated.
Also, for AAC, I use Audacity to convert to PCM/WAV 48KHz 16-bit. Even the pro audio-editing program, Audition, does not like AAC files.
Highly-compressed Audio formats/CODEC's are often highly problematic, and most users find that converting to PCM/WAV is by far, the best way to go. The quality loss will NOT be regained, but the ease of editing will be greatly improved.
Good luck,
Hunt

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