External Boot Drive and Backup

My apologies in advanced if this question has already been answered.
I'm sending my Macbook Pro (Late 08) into Apple Care today to have the trackpad and optical drive replaced, so I'll be with out my computer for a couple of days. So I'm backing everything up, and I'd like to have a bootable external drive so that I can use some of my less CPU intensive applications (Namely, my STAMP Programer). So I have a Seagate 1.5Tb drive (USB unfortunately) that I can use, but it already has some large files on it from my old computer (FCE projects and media, garage band, Movie rips, etc) that I would rather not move. I'm using Carbon Copy Cloner, and I was wondering if I should add a partition to the drive and then tell CCC to use that, or if I should just use the drive as is.
Thanks!
Paul

Is the drive formatted with GUID partition scheme? If not, it will not be bootable.
That said, and if it is, you can create use a partition to make the bootable clone. My Time Machine drive (a USB2 MyBook drive) actually has this - one major (~600GB) partition for TM, and a second partition for a CCC bootable clone. It works fine.

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    Ciao.

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