External drives copying slow

Both of my external drives have been copying at a snail's pace. My computer hasn't shown any other issues.
Both manually uploading files and the automatic Time Machine backups both take forever. They appear to be copying, but at an incredibly slow rate (20mb / hour). In fact, Time Machine hasn't been able to complete a backup since I erased/reformatted the drive last week. I've tried excluding Time Machine from Spotlight indexing.
Please let me know if you need more information. Any guidance would be much appreciated! My rig details are below:
COMPUTER
MacBook Pro
- OSX: 10.9.1 (Maverick)
- Processor: 2.66 GHz Intel Core i7
- Memory: 4 GB 1067 MHz DDR3
DRIVES
1. Western Digital MyBook (3TB - 3.0 usb)
- Mac OS Extended (Journaled)
2. Western Digital MyBookLive (3TB - ethernet)
- Mac OS Extended (Journaled)

I have a similar problem. I have a late 2013 MacBook Pro 13 inch with 8GB RAM and 256GB SSD. OS X Mavericks version 10.9.4 installed.
I am writing an ISO file to a USB flash drive using the dd command in a terminal window. When doing this against a Supersonic Magnum 12GB USB 3 flash drive I achieve around 800 KB/sec. System information confirms that the Magnum is connected at 5Gbit/sec. When monitoring the throughput with iostat I see this:
    4.00 559  2.18
    4.00 556  2.17
    4.00 556  2.17
    4.00 564  2.20
    4.00 560  2.19
    4.00 557  2.18
          disk2
    KB/t tps  MB/s
    4.00 568  2.22
    4.00 385  1.51
    4.00 311  1.22
    4.00 312  1.22
    4.00 291  1.14
    4.00 306  1.19
    4.00 273  1.07
    4.00 255  1.00
    4.00 246  0.96
    4.00 238  0.93
    4.00 230  0.90
    4.00 170  0.66
    4.00 209  0.82
    4.00 165  0.64
    4.00 147  0.57
    4.00 122  0.48
    4.00  97  0.38
    4.00 103  0.40
    4.00  63  0.25
    4.00  65  0.25
          disk2
    KB/t tps  MB/s
    4.00  50  0.20
    4.00  39  0.15
    4.00  31  0.12
When doing the same to a SanDisk 16GB USB 2 flash drive I get around 2.4 MB/sec - about 3 times faster than the USB 3 Magnum drive...
I am in the process of setting up a Windows 8.1 Boot Camp partition on the internal SSD. When finished I will test the same under Windows to see if it's better or worse.

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    Hard drives are fragile, so don't move them while they are in operation as the heads strike the platters and can cause issues like this, however sectors can fail later with data on them all on their own.

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    Message was edited by: Chad Kerychuk

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